STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2523Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: tex:Teth514_0348 regulatory protein, LuxR. (180 aa)    
Predicted Functional Partners:
Ccel_1864
PFAM: ATP-binding region ATPase domain protein; Sensor DegS domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: cth:Cthe_1268 histidine kinase.
 
 
 0.800
Ccel_2524
KEGG: tex:Teth514_0348 regulatory protein, LuxR.
       0.773
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
   
 0.555
Ccel_2212
KEGG: ckl:CKL_2814 hypothetical protein.
  
   
 0.545
Ccel_3418
KEGG: ckl:CKL_3399 hypothetical protein.
 
 
 0.542
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
      
 0.538
Ccel_0532
KEGG: cth:Cthe_0955 hypothetical protein.
  
     0.518
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.495
Ccel_1144
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA-like redox domain; peroxiredoxin domain); Belongs to the sulfur carrier protein TusA family.
  
  
 0.486
Ccel_2145
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: cth:Cthe_2944 periplasmic sensor signal transduction histidine kinase.
 
 
 0.486
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.