Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2573KEGG: hmo:HM1_2071 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Ccel_2572
PFAM: SEC-C motif domain protein; KEGG: cth:Cthe_0060 hypothetical protein.
 
 
 0.598
Ccel_0511
PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain-containing protein.
   
 
 0.554
Ccel_2478
PFAM: Forkhead-associated protein; KEGG: cbf:CLI_3569 FHA domain-containing protein.
   
 
 0.554
Ccel_2076
KEGG: cth:Cthe_0889 putative transmembrane anti-sigma factor.
  
 
   0.461
Ccel_0079
KEGG: cth:Cthe_2259 hypothetical protein.
  
     0.452
Ccel_1735
KEGG: cth:Cthe_0704 hypothetical protein.
  
     0.446
Ccel_2153
TIGRFAM: YD repeat protein; PFAM: YD repeat-containing protein; KEGG: cth:Cthe_3052 YD repeat-containing protein.
  
 
 0.404
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.