Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_2587PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0934 ABC transporter. (240 aa)    
Predicted Functional Partners:
Ccel_2588
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbb:CLD_2608 His/Glu/Gln/Arg/opine ABC transporter permease.
 0.998
Ccel_2589
PFAM: extracellular solute-binding protein family 3; KEGG: aoe:Clos_0183 extracellular solute-binding protein.
 
 0.988
Ccel_1631
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1431 amino acid ABC transporter permease.
 
 
 0.950
Ccel_0886
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mst:Msp_0959 polar amino acid ABC transporter permease.
 
 0.930
Ccel_1632
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1430 amino acid ABC transporter permease.
 
 
 0.915
Ccel_1635
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_2764 extracellular solute-binding protein.
 
 
 0.843
Ccel_0885
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: swo:Swol_0316 extracellular solute-binding protein, family 3.
 
 
 0.842
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
 
      0.807
Ccel_1769
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aoe:Clos_1946 ABC transporter related.
 
     
0.801
Ccel_1770
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: aoe:Clos_1945 ABC transporter related.
 
     
0.706
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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