Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2602PFAM: protein of unknown function DUF124; KEGG: cts:Ctha_1472 protein of unknown function DUF124. (256 aa)    
Predicted Functional Partners:
Ccel_2603
TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: cbl:CLK_1647 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.592
Ccel_2606
KEGG: amt:Amet_1325 hypothetical protein.
       0.428
Ccel_2605
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1324 ABC transporter related.
  
    0.413
Ccel_2604
PFAM: regulatory protein GntR HTH; KEGG: nth:Nther_0732 transcriptional regulator, GntR family.
       0.411
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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