Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2605PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1324 ABC transporter related. (299 aa)    
Predicted Functional Partners:
Ccel_2604
PFAM: regulatory protein GntR HTH; KEGG: nth:Nther_0732 transcriptional regulator, GntR family.
 
  
 0.955
Ccel_2606
KEGG: amt:Amet_1325 hypothetical protein.
 
     0.948
Ccel_1919
PFAM: regulatory protein GntR HTH; KEGG: cbt:CLH_0644 transcriptional regulator, GntR family.
 
    0.716
Ccel_2603
TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; KEGG: cbl:CLK_1647 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
       0.521
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
  
 
 0.495
Ccel_0967
PFAM: ABC-2 type transporter; KEGG: swd:Swoo_2004 ABC-2 type transporter.
 
  
 0.458
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
 
  
 0.458
Ccel_0296
PFAM: ABC-2 type transporter; KEGG: cth:Cthe_2707 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.436
Ccel_2157
Hypothetical protein; KEGG: afl:Aflv_1572 ABC-type multidrug transport system, permease component.
  
 
 0.431
Ccel_1160
KEGG: hmo:HM1_1647 hypothetical protein.
  
 
 0.425
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.