Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2644TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; Listeria/Bacterioides repeat protein; KEGG: lin:lin2724 internalin-like protein. (2178 aa)    
Predicted Functional Partners:
Ccel_3251
KEGG: fth:FTH_0345 hypothetical protein.
  
     0.710
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.702
Ccel_2647
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: dsy:DSY1956 hypothetical protein.
 
     0.678
Ccel_2393
PFAM: S-layer domain protein; KEGG: btk:BT9727_0789 S-layer protein.
 
   
 0.675
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.653
Ccel_0278
PFAM: S-layer domain protein; KEGG: cth:Cthe_2613 S-layer-like domain-containing protein.
  
     0.647
Ccel_2643
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain protein; KEGG: gme:Gmet_0749 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
   
0.630
Ccel_0039
PFAM: S-layer domain protein; KEGG: cth:Cthe_2877 S-layer-like domain-containing protein.
  
     0.609
Ccel_2042
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; KEGG: cth:Cthe_0474 protein of unknown function DUF1078-like protein.
   
 
 0.577
Ccel_2053
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: cth:Cthe_0463 flagellar basal-body rod protein FlgC.
   
   0.544
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.