STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2645Hypothetical protein. (112 aa)    
Predicted Functional Partners:
Ccel_2646
Two component transcriptional regulator, LytTR family; PFAM: response regulator receiver; LytTr DNA-binding region; KEGG: dsy:DSY1957 hypothetical protein.
       0.517
Ccel_2647
Signal transduction histidine kinase regulating citrate/malate metabolism; KEGG: dsy:DSY1956 hypothetical protein.
       0.517
Ccel_2644
TIGRFAM: cell wall/surface repeat protein; PFAM: S-layer domain protein; Listeria/Bacterioides repeat protein; KEGG: lin:lin2724 internalin-like protein.
       0.511
Ccel_2643
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; S-layer domain protein; KEGG: gme:Gmet_0749 peptidase S8 and S53, subtilisin, kexin, sedolisin.
       0.407
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.