STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2651KEGG: cpy:Cphy_3139 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
  
 0.643
Ccel_1212
PFAM: aminoglycoside phosphotransferase; KEGG: cac:CAC2572 aminoglycoside phosphotransferase.
  
 
   0.624
Ccel_3377
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cpy:Cphy_2411 glyoxalase/bleomycin resistance protein/dioxygenase.
 
     0.620
Ccel_2653
PFAM: Amidase; KEGG: ana:all7525 amidase.
 
     0.613
Ccel_2654
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: vvy:VVA1253 hypothetical protein.
 
    0.600
Ccel_0915
PFAM: Abortive infection protein; KEGG: msi:Msm_0803 metal-dependent membrane protease.
 
     0.580
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.565
Ccel_2345
KEGG: cpy:Cphy_2165 hypothetical protein.
  
     0.561
Ccel_2652
Hypothetical protein.
       0.509
Ccel_2193
KEGG: cbh:CLC_1041 hypothetical protein.
  
     0.496
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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