STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2681KEGG: amt:Amet_4173 hypothetical protein. (414 aa)    
Predicted Functional Partners:
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
 
 0.811
Ccel_2680
PFAM: VanZ family protein; KEGG: cbl:CLK_2172 VanZ family membrane protein.
       0.732
Ccel_0466
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1763 ABC transporter related protein.
  
 
 0.698
Ccel_0855
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_2430 ABC transporter, ATP-binding protein.
  
 
 0.698
Ccel_0557
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_3392 hypothetical protein.
  
 
 0.671
Ccel_1151
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbl:CLK_0187 ABC transporter, ATP-binding protein.
  
 
 0.671
Ccel_2356
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_2590 ABC transporter related.
  
 
 0.671
Ccel_2703
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS3158 ABC transporter, ATP-binding protein.
  
 
 0.671
Ccel_0468
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.600
Ccel_2264
Hypothetical protein; KEGG: cbl:CLK_3683 putative bacteriocin ABC transporter, bacteriocin-binding protein.
  
  
 0.600
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.