Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2689PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC02350 ribose transport ATP-binding protein RbsA. (504 aa)    
Predicted Functional Partners:
Ccel_1984
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bja:blr1123 ABC transporter sugar-binding protein.
 
 0.957
Ccel_1643
PFAM: inner-membrane translocator; KEGG: dac:Daci_4580 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 0.929
Ccel_1642
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: vei:Veis_2044 periplasmic binding protein/LacI transcriptional regulator.
 
 
 0.908
Ccel_1226
PFAM: inner-membrane translocator; KEGG: scl:sce3305 inner membrane ABC transporter permease protein YjfF; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.901
Ccel_1225
PFAM: inner-membrane translocator; KEGG: cbe:Cbei_4460 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.891
Ccel_1223
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: cbe:Cbei_4462 periplasmic binding protein/LacI transcriptional regulator.
 
 
 0.825
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. Belongs to the carbohydrate kinase PfkB family. Ribokinase subfamily.
 
  
 0.733
Ccel_2688
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; KEGG: csc:Csac_0239 DeoR family transcriptional regulator.
     
 0.678
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.586
Ccel_2684
PFAM: inner-membrane translocator; KEGG: gka:GK1908 L-arabinose ABC transporter (permease); Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.439
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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