Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_2703PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS3158 ABC transporter, ATP-binding protein. (255 aa)    
Predicted Functional Partners:
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
 
 0.973
Ccel_0856
PFAM: protein of unknown function DUF214; KEGG: afw:Anae109_0497 hypothetical protein.
 
 
 0.659
Ccel_1152
PFAM: protein of unknown function DUF214; KEGG: cbh:CLC_0840 putative ABC transporter, permease protein.
 
 
 0.626
Ccel_2355
PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein.
  
 
 0.595
Ccel_2681
KEGG: amt:Amet_4173 hypothetical protein.
  
 
 0.587
Ccel_0857
PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_3937 hypothetical protein.
  
 
 0.580
Ccel_0558
PFAM: protein of unknown function DUF214; KEGG: ckl:CKL_3391 hypothetical protein.
  
 
 0.569
Ccel_0971
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: mja:MJ0211 UDP-glucose 4-epimerase (GalE).
  
 
   0.506
Ccel_1816
PFAM: glycosyl transferase family 2; KEGG: sgr:SGR_2292 putative sugar transferase.
  
 
 
 0.495
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
 
 0.488
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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