Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2730PFAM: Recombinase; KEGG: dsy:DSY3427 hypothetical protein. (326 aa)    
Predicted Functional Partners:
Ccel_2729
PFAM: Resolvase domain; Recombinase; KEGG: dsy:DSY3426 hypothetical protein.
 
    
0.839
Ccel_2731
PFAM: Resolvase domain; Recombinase; KEGG: dsy:DSY4592 hypothetical protein.
 
    
0.813
Ccel_3111
PFAM: Resolvase domain; Recombinase; KEGG: amt:Amet_4005 resolvase domain-containing protein.
  
     0.768
Ccel_0430
PFAM: Resolvase domain; Recombinase; KEGG: pth:PTH_0181 site-specific recombinases.
  
     0.743
Ccel_3078
PFAM: Resolvase domain; Recombinase; KEGG: tex:Teth514_0698 recombinase.
  
     0.727
Ccel_0845
PFAM: Resolvase domain; Recombinase; KEGG: tex:Teth514_0698 recombinase.
  
     0.692
Ccel_2733
PFAM: Resolvase domain; KEGG: hmo:HM1_0135 hypothetical protein.
 
     0.614
Ccel_2748
KEGG: hmo:HM1_0614 hypothetical protein.
  
     0.613
Ccel_2738
PFAM: TRAG family protein; KEGG: hmo:HM1_0622 TraG/TraD family protein, putative.
 
    0.611
Ccel_2752
KEGG: dsy:DSY4546 hypothetical protein.
  
    0.605
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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