Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_2733PFAM: Resolvase domain; KEGG: hmo:HM1_0135 hypothetical protein. (126 aa)    
Predicted Functional Partners:
Ccel_2732
KEGG: bca:BCE_0416 hypothetical protein.
       0.757
Ccel_2784
KEGG: hmo:HM1_0577 hypothetical protein.
  
     0.748
Ccel_2783
PFAM: S-layer domain protein; SMART: PKD domain containing protein; KEGG: hmo:HM1_0578 hypothetical protein.
  
     0.675
Ccel_2771
KEGG: dsy:DSY4557 hypothetical protein.
  
     0.670
Ccel_2769
KEGG: dsy:DSY4556 hypothetical protein.
  
     0.663
Ccel_2770
KEGG: hmo:HM1_0593 hypothetical protein.
  
     0.659
Ccel_2787
PFAM: D12 class N6 adenine-specific DNA methyltransferase; KEGG: hmo:HM1_0574 d12 class n6 adenine-specific DNA methyltransferase superfamily protein.
 
    0.652
Ccel_2748
KEGG: hmo:HM1_0614 hypothetical protein.
  
     0.643
Ccel_2740
KEGG: ckl:CKL_3863 hypothetical protein.
 
     0.635
Ccel_2779
PFAM: peptidase A24A prepilin type IV; KEGG: hmo:HM1_0584 type IV prepilin-like proteins leader peptide-processing enzyme.
  
     0.632
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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