Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2741TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: cbe:Cbei_2112 arsenical-resistance protein. (349 aa)    
Predicted Functional Partners:
Ccel_1068
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: dsy:DSY4671 hypothetical protein.
  
  
 0.914
Ccel_1065
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: dsy:DSY4600 hypothetical protein.
 
  
 0.707
Ccel_0258
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: cth:Cthe_2596 protein tyrosine phosphatase.
  
  
 0.531
Ccel_2740
KEGG: ckl:CKL_3863 hypothetical protein.
       0.490
Ccel_1144
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA-like redox domain; peroxiredoxin domain); Belongs to the sulfur carrier protein TusA family.
     
 0.455
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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