Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2744KEGG: cpr:CPR_0876 hypothetical protein. (272 aa)    
Predicted Functional Partners:
Ccel_1126
PFAM: copper amine oxidase domain protein; KEGG: nmr:Nmar_0998 hypothetical protein.
  
     0.704
Ccel_1853
KEGG: tpd:Teth39_0898 hypothetical protein.
  
     0.648
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.635
Ccel_1718
PFAM: copper amine oxidase domain protein; KEGG: cpo:COPRO5265_1378 putative branched chain amino acid ABC transporter substrate-binding protein.
  
     0.632
Ccel_2334
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_1909 copper amine oxidase-like protein.
  
     0.599
Ccel_3019
PFAM: S-layer domain protein; KEGG: swo:Swol_0298 hypothetical protein.
  
     0.588
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.584
Ccel_2923
KEGG: aoe:Clos_2272 hypothetical protein.
  
     0.571
Ccel_1376
PFAM: S-layer domain protein; copper amine oxidase domain protein; KEGG: lsp:Bsph_1041 putative S-layer protein/N-acetylmuramoyl-L-alanine amidase.
  
     0.551
Ccel_2393
PFAM: S-layer domain protein; KEGG: btk:BT9727_0789 S-layer protein.
  
     0.520
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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