Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2764KEGG: hmo:HM1_0599 hypothetical protein. (286 aa)    
Predicted Functional Partners:
Ccel_2755
KEGG: hmo:HM1_0601 hypothetical protein.
 
     0.821
Ccel_2768
KEGG: ckl:CKL_3882 hypothetical protein.
 
     0.821
Ccel_2769
KEGG: dsy:DSY4556 hypothetical protein.
 
     0.797
Ccel_2770
KEGG: hmo:HM1_0593 hypothetical protein.
 
     0.789
Ccel_2753
KEGG: hmo:HM1_0605 hypothetical protein.
 
     0.788
Ccel_2752
KEGG: dsy:DSY4546 hypothetical protein.
 
     0.786
Ccel_2771
KEGG: dsy:DSY4557 hypothetical protein.
 
     0.783
Ccel_2747
KEGG: hmo:HM1_0617 hypothetical protein.
 
     0.782
Ccel_2748
KEGG: hmo:HM1_0614 hypothetical protein.
 
     0.782
Ccel_2772
KEGG: hmo:HM1_0591 hypothetical protein.
 
     0.781
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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