STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2770KEGG: hmo:HM1_0593 hypothetical protein. (183 aa)    
Predicted Functional Partners:
Ccel_2769
KEGG: dsy:DSY4556 hypothetical protein.
 
     0.919
Ccel_2771
KEGG: dsy:DSY4557 hypothetical protein.
 
     0.911
Ccel_2772
KEGG: hmo:HM1_0591 hypothetical protein.
 
     0.911
Ccel_2774
KEGG: hmo:HM1_0589 hypothetical protein.
 
     0.895
Ccel_2775
KEGG: hmo:HM1_0588 hypothetical protein.
 
     0.886
Ccel_2778
PFAM: SAF domain protein; KEGG: hmo:HM1_0585 hypothetical protein.
 
     0.886
Ccel_2780
KEGG: hmo:HM1_0583 hypothetical protein.
 
     0.884
Ccel_2768
KEGG: ckl:CKL_3882 hypothetical protein.
 
     0.879
Ccel_2779
PFAM: peptidase A24A prepilin type IV; KEGG: hmo:HM1_0584 type IV prepilin-like proteins leader peptide-processing enzyme.
 
     0.875
Ccel_2776
PFAM: type II secretion system protein E; KEGG: hmo:HM1_0587 type II/IV secretion system protein.
 
     0.872
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.