Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2771KEGG: dsy:DSY4557 hypothetical protein. (181 aa)    
Predicted Functional Partners:
Ccel_2772
KEGG: hmo:HM1_0591 hypothetical protein.
 
     0.957
Ccel_2774
KEGG: hmo:HM1_0589 hypothetical protein.
 
     0.931
Ccel_2775
KEGG: hmo:HM1_0588 hypothetical protein.
 
     0.931
Ccel_2778
PFAM: SAF domain protein; KEGG: hmo:HM1_0585 hypothetical protein.
 
     0.931
Ccel_2780
KEGG: hmo:HM1_0583 hypothetical protein.
 
     0.930
Ccel_2776
PFAM: type II secretion system protein E; KEGG: hmo:HM1_0587 type II/IV secretion system protein.
 
     0.919
Ccel_2779
PFAM: peptidase A24A prepilin type IV; KEGG: hmo:HM1_0584 type IV prepilin-like proteins leader peptide-processing enzyme.
 
     0.919
Ccel_2777
KEGG: hmo:HM1_0586 hypothetical protein.
 
     0.918
Ccel_2770
KEGG: hmo:HM1_0593 hypothetical protein.
 
     0.912
Ccel_2769
KEGG: dsy:DSY4556 hypothetical protein.
 
     0.888
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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