Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_2776PFAM: type II secretion system protein E; KEGG: hmo:HM1_0587 type II/IV secretion system protein. (503 aa)    
Predicted Functional Partners:
Ccel_2775
KEGG: hmo:HM1_0588 hypothetical protein.
 
 
 0.997
Ccel_2774
KEGG: hmo:HM1_0589 hypothetical protein.
 
 
 0.996
Ccel_0504
KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein.
 
 
 0.967
Ccel_2778
PFAM: SAF domain protein; KEGG: hmo:HM1_0585 hypothetical protein.
 
  
 0.966
Ccel_2779
PFAM: peptidase A24A prepilin type IV; KEGG: hmo:HM1_0584 type IV prepilin-like proteins leader peptide-processing enzyme.
 
   
 0.950
Ccel_2777
KEGG: hmo:HM1_0586 hypothetical protein.
 
     0.949
Ccel_2780
KEGG: hmo:HM1_0583 hypothetical protein.
 
     0.949
Ccel_0505
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
  
 
 0.948
Ccel_0503
PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E.
  
  
 
0.920
Ccel_2771
KEGG: dsy:DSY4557 hypothetical protein.
 
     0.919
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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