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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2811PFAM: DNA polymerase beta domain protein region; KEGG: ckl:CKL_2617 hypothetical protein. (289 aa)    
Predicted Functional Partners:
Ccel_2810
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: ckl:CKL_2616 methyltransferase.
 
     0.925
Ccel_2808
PFAM: DNA polymerase beta domain protein region; KEGG: ckl:CKL_2614 streptomycin 3''-adenylyltransferase.
 
     0.864
Ccel_2812
KEGG: dde:Dde_0890 hypothetical protein.
       0.742
Ccel_2809
PFAM: GCN5-related N-acetyltransferase; protein of unknown function UPF0157; KEGG: ckl:CKL_2615 hypothetical protein.
     
 0.696
Ccel_2813
KEGG: amt:Amet_3967 hypothetical protein.
       0.638
Ccel_2815
PFAM: Recombinase; KEGG: bca:BCE_0418 hypothetical protein.
 
     0.538
Ccel_2816
PFAM: Resolvase domain; Recombinase; KEGG: ckl:CKL_2622 hypothetical protein.
 
     0.474
Ccel_3050
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
  
     0.473
Ccel_3297
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
  
     0.473
Ccel_2814
PFAM: Resolvase domain; Recombinase; KEGG: ckl:CKL_2620 hypothetical protein.
 
     0.469
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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