Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2816PFAM: Resolvase domain; Recombinase; KEGG: ckl:CKL_2622 hypothetical protein. (521 aa)    
Predicted Functional Partners:
Ccel_2815
PFAM: Recombinase; KEGG: bca:BCE_0418 hypothetical protein.
 
     0.946
Ccel_2817
KEGG: ckl:CKL_2623 hypothetical protein.
 
    0.884
Ccel_2814
PFAM: Resolvase domain; Recombinase; KEGG: ckl:CKL_2620 hypothetical protein.
 
    
0.811
Ccel_2820
KEGG: hmo:HM1_2974 hypothetical protein.
 
    0.606
Ccel_2840
KEGG: bca:BCE_0394 hypothetical protein.
 
   
 0.591
Ccel_2821
KEGG: hmo:HM1_2973 hypothetical protein.
 
    0.587
Ccel_2819
TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: hmo:HM1_2868 holin, toxin secretion/phage lysis family protein.
 
  
 0.571
Ccel_2842
PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: bca:BCE_0392 DNA methylase, family protein; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.562
Ccel_2844
KEGG: ckl:CKL_2651 hypothetical protein.
 
    0.557
Ccel_2824
TIGRFAM: phage tail component; KEGG: hmo:HM1_2970 phage tail protein.
 
    0.552
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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