Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_2819TIGRFAM: toxin secretion/phage lysis holin; PFAM: Holin toxin secretion/phage lysis; KEGG: hmo:HM1_2868 holin, toxin secretion/phage lysis family protein. (138 aa)    
Predicted Functional Partners:
Ccel_2818
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Sporulation domain protein; KEGG: bca:BCE_0415 N-acetylmuramoyl-L-alanine amidase domain-containing protein.
 
   
 0.872
Ccel_2834
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bca:BCE_0400 HK97 family phage major capsid protein.
 
    0.817
Ccel_2836
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bca:BCE_0398 HK97 family phage portal protein.
 
   
 0.798
Ccel_2828
TIGRFAM: phage major tail protein, phi13 family; KEGG: hmo:HM1_2966 phi13 family phage major tail protein.
 
  
 0.793
Ccel_2837
PFAM: Terminase; KEGG: bca:BCE_0397 phage terminase, large subunit, putative.
 
   
 0.784
Ccel_2844
KEGG: ckl:CKL_2651 hypothetical protein.
 
    0.784
Ccel_2825
KEGG: bca:BCE_0409 hypothetical protein.
 
    0.781
Ccel_2831
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: tex:Teth514_1257 phage head-tail adaptor, putative.
 
    0.748
Ccel_2829
KEGG: hmo:HM1_2965 hypothetical protein.
 
    0.746
Ccel_2832
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bca:BCE_0402 phage protein DNA packaging protein.
 
    0.745
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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