Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2822KEGG: hmo:HM1_2972 hypothetical protein. (67 aa)    
Predicted Functional Partners:
Ccel_2821
KEGG: hmo:HM1_2973 hypothetical protein.
  
    0.826
Ccel_2823
TIGRFAM: phage minor structural protein; KEGG: hmo:HM1_2971 phage minor structural protein, N-terminal.
  
    0.826
Ccel_2824
TIGRFAM: phage tail component; KEGG: hmo:HM1_2970 phage tail protein.
  
    0.823
Ccel_2820
KEGG: hmo:HM1_2974 hypothetical protein.
  
    0.789
Ccel_2825
KEGG: bca:BCE_0409 hypothetical protein.
       0.757
Ccel_2830
TIGRFAM: phage protein, HK97 gp10 family; KEGG: hmo:HM1_2964 HK97 family phage protein, putative.
  
    0.724
Ccel_2826
KEGG: hmo:HM1_2968 hypothetical protein.
       0.718
Ccel_2831
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: tex:Teth514_1257 phage head-tail adaptor, putative.
  
    0.718
Ccel_2827
KEGG: hmo:HM1_2967 hypothetical protein.
       0.716
Ccel_2829
KEGG: hmo:HM1_2965 hypothetical protein.
       0.713
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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