Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2833KEGG: bca:BCE_0401 hypothetical protein. (70 aa)    
Predicted Functional Partners:
Ccel_2832
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bca:BCE_0402 phage protein DNA packaging protein.
 
     0.936
Ccel_2830
TIGRFAM: phage protein, HK97 gp10 family; KEGG: hmo:HM1_2964 HK97 family phage protein, putative.
 
     0.934
Ccel_2831
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: tex:Teth514_1257 phage head-tail adaptor, putative.
 
     0.934
Ccel_2827
KEGG: hmo:HM1_2967 hypothetical protein.
 
     0.933
Ccel_2829
KEGG: hmo:HM1_2965 hypothetical protein.
 
     0.933
Ccel_2828
TIGRFAM: phage major tail protein, phi13 family; KEGG: hmo:HM1_2966 phi13 family phage major tail protein.
 
     0.929
Ccel_2825
KEGG: bca:BCE_0409 hypothetical protein.
 
     0.909
Ccel_2818
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; Sporulation domain protein; KEGG: bca:BCE_0415 N-acetylmuramoyl-L-alanine amidase domain-containing protein.
 
     0.873
Ccel_2834
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bca:BCE_0400 HK97 family phage major capsid protein.
 
     0.834
Ccel_2847
KEGG: bca:BCE_0387 hypothetical protein.
 
     0.792
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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