Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_2835PFAM: peptidase S14 ClpP; KEGG: bca:BCE_0399 ClpP protease family protein; Belongs to the peptidase S14 family. (229 aa)    
Predicted Functional Partners:
Ccel_2836
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bca:BCE_0398 HK97 family phage portal protein.
 
  
 0.961
clpX
ATP-dependent Clp protease, ATP-binding subunit ClpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
 
 0.946
Ccel_2834
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bca:BCE_0400 HK97 family phage major capsid protein.
 
    0.940
Ccel_2837
PFAM: Terminase; KEGG: bca:BCE_0397 phage terminase, large subunit, putative.
 
     0.916
Ccel_2840
KEGG: bca:BCE_0394 hypothetical protein.
 
    0.850
Ccel_2844
KEGG: ckl:CKL_2651 hypothetical protein.
 
    0.846
Ccel_2842
PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: bca:BCE_0392 DNA methylase, family protein; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.832
Ccel_0327
PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1789 ATPase AAA-2; Belongs to the ClpA/ClpB family.
   
 
 0.830
Ccel_2116
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.
   
 
 0.830
Ccel_2832
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: bca:BCE_0402 phage protein DNA packaging protein.
 
    0.821
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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