Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
Ccel_2845PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bca:BCE_0389 HNH endonuclease domain-containing protein. (119 aa)    
Predicted Functional Partners:
Ccel_2840
KEGG: bca:BCE_0394 hypothetical protein.
 
    0.922
Ccel_2844
KEGG: ckl:CKL_2651 hypothetical protein.
 
    0.905
Ccel_2837
PFAM: Terminase; KEGG: bca:BCE_0397 phage terminase, large subunit, putative.
 
  
 0.900
Ccel_2842
PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; KEGG: bca:BCE_0392 DNA methylase, family protein; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.899
Ccel_2836
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: bca:BCE_0398 HK97 family phage portal protein.
 
  
 0.860
Ccel_2960
PFAM: Terminase; KEGG: spa:M6_Spy1141 terminase large subunit.
 
  
 0.853
Ccel_2846
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein.
 
     0.833
Ccel_2834
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: bca:BCE_0400 HK97 family phage major capsid protein.
 
  
 0.829
Ccel_2835
PFAM: peptidase S14 ClpP; KEGG: bca:BCE_0399 ClpP protease family protein; Belongs to the peptidase S14 family.
 
  
 0.805
Ccel_2839
KEGG: tex:Teth514_1247 hypothetical protein.
 
    0.798
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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