Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2846Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein. (137 aa)    
Predicted Functional Partners:
Ccel_2847
KEGG: bca:BCE_0387 hypothetical protein.
 
     0.955
Ccel_2849
PFAM: VRR-NUC domain protein; KEGG: ckl:CKL_2657 hypothetical protein.
 
     0.858
Ccel_2848
PFAM: SNF2-related protein; SMART: DEAD-like helicases; KEGG: ckl:CKL_2656 phage-related DNA helicase.
 
     0.843
Ccel_2845
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bca:BCE_0389 HNH endonuclease domain-containing protein.
 
     0.833
Ccel_0092
PFAM: Anti-sigma-28 factor FlgM family protein; KEGG: cth:Cthe_2246 anti-sigma-28 factor, FlgM.
 
 
 0.811
Ccel_2851
KEGG: bca:BCE_0383 hypothetical protein.
 
     0.777
Ccel_2840
KEGG: bca:BCE_0394 hypothetical protein.
 
     0.752
Ccel_2860
KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative.
 
     0.750
Ccel_2862
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2666 hypothetical protein.
 
   
 0.740
Ccel_2852
PFAM: phage antirepressor protein; AntA/AntB antirepressor domain protein; KEGG: bca:BCE_0382 phage antirepressor protein, putative.
 
     0.739
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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