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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2848PFAM: SNF2-related protein; SMART: DEAD-like helicases; KEGG: ckl:CKL_2656 phage-related DNA helicase. (453 aa)    
Predicted Functional Partners:
Ccel_2849
PFAM: VRR-NUC domain protein; KEGG: ckl:CKL_2657 hypothetical protein.
 
     0.949
Ccel_2846
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein.
 
     0.844
Ccel_2847
KEGG: bca:BCE_0387 hypothetical protein.
 
     0.814
Ccel_2850
PFAM: virulence-associated E family protein; KEGG: bca:BCE_0384 virulence-associated protein E.
 
     0.808
Ccel_2856
PFAM: DNA-directed DNA polymerase; KEGG: bca:BCE_0377 DNA polymerase I.
 
 
 0.798
Ccel_3062
PFAM: DNA-directed DNA polymerase; KEGG: drm:Dred_1191 DNA-directed DNA polymerase.
 
 
 0.798
Ccel_3056
PFAM: VRR-NUC domain protein; KEGG: cbf:CLI_2427 VRR-NUC domain-containing protein.
 
     0.784
Ccel_2858
KEGG: bca:BCE_0376 hypothetical protein.
 
     0.783
Ccel_2859
KEGG: ckl:CKL_2663 hypothetical protein.
 
     0.783
Ccel_3065
KEGG: drm:Dred_1189 hypothetical protein.
 
     0.783
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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