Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2848PFAM: SNF2-related protein; SMART: DEAD-like helicases; KEGG: ckl:CKL_2656 phage-related DNA helicase. (453 aa)    
Predicted Functional Partners:
Ccel_2849
PFAM: VRR-NUC domain protein; KEGG: ckl:CKL_2657 hypothetical protein.
 
     0.948
Ccel_2846
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein.
 
     0.843
Ccel_2847
KEGG: bca:BCE_0387 hypothetical protein.
 
     0.813
Ccel_2850
PFAM: virulence-associated E family protein; KEGG: bca:BCE_0384 virulence-associated protein E.
 
     0.806
Ccel_2856
PFAM: DNA-directed DNA polymerase; KEGG: bca:BCE_0377 DNA polymerase I.
 
 
 0.797
Ccel_3062
PFAM: DNA-directed DNA polymerase; KEGG: drm:Dred_1191 DNA-directed DNA polymerase.
 
 
 0.796
Ccel_2858
KEGG: bca:BCE_0376 hypothetical protein.
 
     0.782
Ccel_2859
KEGG: ckl:CKL_2663 hypothetical protein.
 
     0.782
Ccel_3056
PFAM: VRR-NUC domain protein; KEGG: cbf:CLI_2427 VRR-NUC domain-containing protein.
 
     0.782
Ccel_3065
KEGG: drm:Dred_1189 hypothetical protein.
 
     0.782
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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