Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2852PFAM: phage antirepressor protein; AntA/AntB antirepressor domain protein; KEGG: bca:BCE_0382 phage antirepressor protein, putative. (250 aa)    
Predicted Functional Partners:
Ccel_2850
PFAM: virulence-associated E family protein; KEGG: bca:BCE_0384 virulence-associated protein E.
 
     0.855
Ccel_2851
KEGG: bca:BCE_0383 hypothetical protein.
 
     0.855
Ccel_2847
KEGG: bca:BCE_0387 hypothetical protein.
 
     0.837
Ccel_2862
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2666 hypothetical protein.
 
     0.754
Ccel_2846
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein.
 
     0.739
Ccel_2841
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: bca:BCE_0393 DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.677
Ccel_2825
KEGG: bca:BCE_0409 hypothetical protein.
 
     0.641
Ccel_2860
KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative.
 
     0.624
Ccel_2845
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bca:BCE_0389 HNH endonuclease domain-containing protein.
 
    0.580
Ccel_2838
KEGG: bca:BCE_0396 hypothetical protein.
 
     0.576
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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