Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2861KEGG: ckl:CKL_2665 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Ccel_2860
KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative.
 
     0.950
Ccel_2859
KEGG: ckl:CKL_2663 hypothetical protein.
 
     0.907
Ccel_2862
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2666 hypothetical protein.
 
     0.903
Ccel_2858
KEGG: bca:BCE_0376 hypothetical protein.
 
     0.899
Ccel_2856
PFAM: DNA-directed DNA polymerase; KEGG: bca:BCE_0377 DNA polymerase I.
 
     0.733
Ccel_2857
PFAM: HNH endonuclease; NUMOD4 domain protein; KEGG: amt:Amet_4010 NUMOD4 domain-containing protein.
 
     0.704
Ccel_2844
KEGG: ckl:CKL_2651 hypothetical protein.
  
     0.629
Ccel_2840
KEGG: bca:BCE_0394 hypothetical protein.
  
     0.602
Ccel_2817
KEGG: ckl:CKL_2623 hypothetical protein.
 
     0.585
Ccel_2833
KEGG: bca:BCE_0401 hypothetical protein.
  
     0.550
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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