Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2862Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2666 hypothetical protein. (177 aa)    
Predicted Functional Partners:
Ccel_2860
KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative.
 
     0.903
Ccel_2861
KEGG: ckl:CKL_2665 hypothetical protein.
 
     0.903
Ccel_2847
KEGG: bca:BCE_0387 hypothetical protein.
 
     0.776
Ccel_2864
KEGG: ckl:CKL_2668 hypothetical protein.
 
     0.761
Ccel_2852
PFAM: phage antirepressor protein; AntA/AntB antirepressor domain protein; KEGG: bca:BCE_0382 phage antirepressor protein, putative.
 
     0.754
Ccel_2859
KEGG: ckl:CKL_2663 hypothetical protein.
 
     0.752
Ccel_2846
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein.
 
   
 0.740
Ccel_2841
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: bca:BCE_0393 DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
     0.732
Ccel_2858
KEGG: bca:BCE_0376 hypothetical protein.
 
     0.713
Ccel_2833
KEGG: bca:BCE_0401 hypothetical protein.
  
     0.699
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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