STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2864KEGG: ckl:CKL_2668 hypothetical protein. (622 aa)    
Predicted Functional Partners:
Ccel_2862
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2666 hypothetical protein.
 
     0.762
Ccel_2846
Putative RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily; KEGG: ckl:CKL_2654 hypothetical protein.
 
     0.726
Ccel_2841
TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; KEGG: bca:BCE_0393 DNA-cytosine methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
  
     0.585
Ccel_2865
Transcriptional regulator, XRE family; KEGG: ckl:CKL_2669 hypothetical protein.
  
    0.564
Ccel_0826
KEGG: cbb:CLD_2462 hypothetical protein.
  
     0.559
Ccel_2824
TIGRFAM: phage tail component; KEGG: hmo:HM1_2970 phage tail protein.
  
     0.540
Ccel_2847
KEGG: bca:BCE_0387 hypothetical protein.
  
     0.539
Ccel_2863
KEGG: ckl:CKL_2667 hypothetical protein.
       0.533
Ccel_2823
TIGRFAM: phage minor structural protein; KEGG: hmo:HM1_2971 phage minor structural protein, N-terminal.
  
     0.519
Ccel_2821
KEGG: hmo:HM1_2973 hypothetical protein.
  
     0.508
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.