Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2872KEGG: cno:NT01CX_1826 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Ccel_2871
KEGG: ctc:CTC01970 membrane associated protein.
       0.785
Ccel_0377
KEGG: dsy:DSY4420 hypothetical protein.
 
    0.722
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.640
Ccel_1718
PFAM: copper amine oxidase domain protein; KEGG: cpo:COPRO5265_1378 putative branched chain amino acid ABC transporter substrate-binding protein.
  
     0.577
Ccel_2991
KEGG: cbe:Cbei_1948 hypothetical protein.
  
     0.577
Ccel_1805
KEGG: bay:RBAM_013480 hypothetical protein.
  
     0.564
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
  
     0.551
Ccel_1970
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: cth:Cthe_0668 spore germination protein.
  
    0.542
Ccel_2873
PFAM: membrane protein of unknown function; KEGG: cth:Cthe_2067 hypothetical protein.
       0.536
Ccel_2298
PFAM: transposase IS605 OrfB; KEGG: tma:TM1831 transposase, putative.
  
     0.529
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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