Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_2873PFAM: membrane protein of unknown function; KEGG: cth:Cthe_2067 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Ccel_1853
KEGG: tpd:Teth39_0898 hypothetical protein.
  
     0.764
Ccel_1907
KEGG: cth:Cthe_0836 hypothetical protein.
  
     0.761
Ccel_3340
TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein.
  
    0.703
Ccel_2925
Putative transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: aoe:Clos_2274 CopG family transcriptional regulator.
  
     0.648
Ccel_0812
Sigma 54 interacting domain protein; KEGG: cth:Cthe_2742 endopeptidase La; TIGRFAM: ATP-dependent protease LonB; PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; peptidase S16 lon domain protein; SMART: AAA ATPase.
  
     0.614
Ccel_0009
KEGG: cth:Cthe_2379 hypothetical protein.
  
     0.597
Ccel_2871
KEGG: ctc:CTC01970 membrane associated protein.
       0.536
Ccel_2872
KEGG: cno:NT01CX_1826 hypothetical protein.
       0.536
Ccel_1194
PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_3197 PRC-barrel domain-containing protein.
  
     0.513
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.490
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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