STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_2886PFAM: chemotaxis sensory transducer; KEGG: cbt:CLH_3030 methyl-accepting chemotaxis protein. (494 aa)    
Predicted Functional Partners:
Ccel_1727
PFAM: MCP methyltransferase CheR-type; KEGG: cth:Cthe_0717 MCP methyltransferase, CheR-type.
 
 0.982
Ccel_2027
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases.
 
 0.980
Ccel_2315
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region ATPase domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; KEGG: cbe:Cbei_4829 CheA signal transduction histidine kinase.
 
 0.980
cheD
CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
  0.975
Ccel_0588
PFAM: CheW domain protein; KEGG: cth:Cthe_0878 CheW protein.
 
 0.958
Ccel_2026
PFAM: CheW domain protein; KEGG: cth:Cthe_0491 CheW protein.
 
 0.958
Ccel_2099
PFAM: CheW domain protein; KEGG: tpd:Teth39_1010 CheW protein.
 
 0.958
Ccel_2314
PFAM: CheW domain protein; KEGG: cbe:Cbei_4822 putative CheW protein.
 
 0.957
cheB
Response regulator receiver modulated CheB methylesterase; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
 
 0.940
Ccel_2310
PFAM: CheB methylesterase; KEGG: ckl:CKL_0573 CheB1.
 
 0.940
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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