Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2935TIGRFAM: transcriptional regulator, PadR-family; PFAM: transcriptional regulator PadR family protein; KEGG: aoe:Clos_2352 PadR-like family transcriptional regulator. (116 aa)    
Predicted Functional Partners:
Ccel_2934
PFAM: cell cycle protein; KEGG: aoe:Clos_2351 cell division membrane protein-like protein; Belongs to the SEDS family.
 
    0.834
Ccel_1104
KEGG: bwe:BcerKBAB4_2612 hypothetical protein.
 
     0.525
Ccel_2936
KEGG: csc:Csac_0270 hypothetical protein.
       0.473
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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