Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2950PFAM: transposase IS3/IS911 family protein; KEGG: drm:Dred_1014 transposase IS3/IS911 family protein. (94 aa)    
Predicted Functional Partners:
Ccel_2951
KEGG: cbe:Cbei_0914 hypothetical protein.
       0.701
Ccel_2952
KEGG: cbe:Cbei_0913 hypothetical protein.
       0.701
Ccel_2953
KEGG: amt:Amet_2418 hypothetical protein.
       0.701
Ccel_2954
TIGRFAM: phage head-tail adaptor; KEGG: amt:Amet_2417 phage head-tail adaptor, putative.
       0.701
Ccel_2955
TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: cbk:CLL_A0947 hypothetical protein.
       0.701
Ccel_2949
PFAM: Integrase catalytic region; KEGG: afl:Aflv_2378 transposase.
  
    0.631
Ccel_2956
TIGRFAM: phage major capsid protein, HK97 family; PFAM: major capsid protein HK97; KEGG: cbk:CLL_A0946 phage major capsid protein, HK97 family.
       0.565
Ccel_2957
Hypothetical protein.
       0.504
Ccel_2958
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35 phage prohead HK97; KEGG: cpe:CPE1121 phage phi-C31 GP35-like protein.
       0.420
Ccel_2959
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: cbk:CLL_A0944 phage portal protein, HK97 family.
       0.420
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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