Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2993PFAM: protein of unknown function DUF1121; KEGG: cbl:CLK_0192 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Ccel_2994
PFAM: protein of unknown function DUF188; KEGG: aoe:Clos_2709 hypothetical protein; Belongs to the UPF0178 family.
       0.740
Ccel_2992
PFAM: protein of unknown function DUF503; KEGG: cpy:Cphy_1545 hypothetical protein.
       0.678
Ccel_0016
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cpy:Cphy_3558 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
     
 0.607
Ccel_2991
KEGG: cbe:Cbei_1948 hypothetical protein.
       0.568
Ccel_2995
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6229 sugar transport system permease protein.
  
    0.562
Ccel_2996
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llc:LACR_1477 ABC-type sugar transport system, permease component.
       0.558
Ccel_2097
TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sfu:Sfum_3382 HAD-superfamily hydrolase, subfamily IA, variant 1.
 
      0.548
Ccel_1164
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; 4Fe-4S ferredoxin, iron-sulphur binding, conserved site; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
     
 0.540
Ccel_0146
PFAM: polysaccharide deacetylase; KEGG: pmo:Pmob_0232 polysaccharide deacetylase.
  
    0.456
pyrK
Oxidoreductase FAD/NAD(P)-binding domain protein; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
  
   0.433
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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