Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_2997PFAM: extracellular solute-binding protein family 1; KEGG: sco:SCO6231 sugar transport system sugar-binding lipoprotein. (462 aa)    
Predicted Functional Partners:
Ccel_2995
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6229 sugar transport system permease protein.
 
 
 0.902
Ccel_2996
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: llc:LACR_1477 ABC-type sugar transport system, permease component.
 
 
 0.891
Ccel_3001
PFAM: glycosidase PH1107-related; KEGG: tpt:Tpet_1543 glycosidase, PH1107-related.
 
   
 0.679
Ccel_2909
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.650
Ccel_0998
PFAM: extracellular solute-binding protein family 1; KEGG: cpy:Cphy_3409 extracellular solute-binding protein.
  
   
 0.634
Ccel_0152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3208 binding-protein-dependent transport systems inner membrane component.
  
 
 0.590
Ccel_2999
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: bcl:ABC0314 transcriptional regulator.
 
  
 0.572
Ccel_3003
Glycosidase PH1107-related; Converts 4-O-beta-D-mannopyranosyl-D-glucopyranose (Man-Glc) to mannose 1-phosphate (Man1P) and glucose; Belongs to the glycosyl hydrolase 130 family.
 
   
 0.568
Ccel_2389
KEGG: bwe:BcerKBAB4_1783 cyclic peptide transporter; TIGRFAM: cyclic peptide transporter; PFAM: beta-lactamase; ABC transporter related; SMART: AAA ATPase.
  
     0.565
Ccel_2457
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1548 binding-protein-dependent transport systems inner membrane component.
  
 
 0.560
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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