STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3005PFAM: permease; KEGG: cbe:Cbei_4662 permease. (524 aa)    
Predicted Functional Partners:
Ccel_3004
PFAM: Protein of unknown function DUF1980; KEGG: dsy:DSY0109 hypothetical protein.
  
 0.987
Ccel_3006
PFAM: cobalamin synthesis protein P47K; KEGG: cbe:Cbei_2463 cobalamin synthesis protein, P47K.
 
   
0.862
Ccel_1156
PFAM: periplasmic solute binding protein; KEGG: cpy:Cphy_3491 periplasmic solute binding protein.
  
  
 0.726
rpmG
PFAM: ribosomal protein L33; KEGG: cac:CAC3151 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.687
rpsZ
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
 
 0.680
Ccel_3007
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cth:Cthe_0546 ferric uptake regulator family protein; Belongs to the Fur family.
     
 0.627
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; In the N-terminal section; belongs to the PRA-CH family.
     
 0.617
Ccel_1852
PFAM: zinc finger DksA/TraR C4-type; KEGG: cth:Cthe_0623 TraR/DksA family transcriptional regulator.
  
  
 0.592
rpmB
PFAM: ribosomal protein L28; KEGG: cth:Cthe_1279 50S ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.587
Ccel_1282
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cpy:Cphy_1379 precorrin-6x reductase.
  
  
 0.572
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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