STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3011TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: aoe:Clos_2720 spore germination protein. (368 aa)    
Predicted Functional Partners:
Ccel_3013
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: aoe:Clos_2719 spore germination B3 GerAC family protein.
  
 0.964
Ccel_3014
PFAM: GerA spore germination protein; KEGG: aoe:Clos_2718 GerA spore germination protein.
 
  
 0.949
Ccel_0523
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like.
 
  
 0.780
Ccel_0654
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
 
  
 0.768
Ccel_3012
Hypothetical protein.
       0.758
Ccel_1969
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: cth:Cthe_0669 spore germination B3 GerAC like.
 
  
 0.710
Ccel_1971
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.708
Ccel_0036
TIGRFAM: germination protein YpeB; PFAM: Propeptide PepSY amd peptidase M4; KEGG: cth:Cthe_2416 peptidase.
 
     0.696
Ccel_0521
PFAM: GerA spore germination protein; KEGG: cth:Cthe_0667 GerA spore germination protein.
 
  
 0.694
Ccel_1357
KEGG: cth:Cthe_2350 cell wall hydrolase, SleB.
  
  
 0.675
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.