STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3035Phage-related protein-like protein; KEGG: dsy:DSY2176 hypothetical protein. (841 aa)    
Predicted Functional Partners:
Ccel_3038
KEGG: cpf:CPF_0962 hypothetical protein.
 
    0.917
Ccel_3033
Hypothetical protein; KEGG: cpf:CPF_0969 KID repeat-containing protein.
 
     0.896
Ccel_3034
KEGG: ljo:LJ0323 Lj965 prophage protein.
 
     0.862
Ccel_3044
KEGG: cpf:CPF_0956 putative phage major capsid protein.
 
    0.837
Ccel_3048
Hypothetical protein; KEGG: cpf:CPF_0952 putative phage minor capsid protein.
 
     0.818
Ccel_3050
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
 
     0.818
Ccel_3036
KEGG: cpf:CPF_0964 hypothetical protein.
       0.781
Ccel_3037
Hypothetical protein.
       0.779
Ccel_3285
KEGG: cpf:CPF_0962 hypothetical protein.
 
    0.769
Ccel_3297
KEGG: cpf:CPF_0949 putative phage terminase, large subunit.
 
     0.743
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.