Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3040KEGG: cpf:CPF_0960 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Ccel_3038
KEGG: cpf:CPF_0962 hypothetical protein.
       0.785
Ccel_3039
KEGG: cpf:CPF_0961 hypothetical protein.
       0.785
Ccel_3041
KEGG: cpf:CPF_0959 hypothetical protein.
       0.785
Ccel_3042
KEGG: cpf:CPF_0958 hypothetical protein.
       0.785
Ccel_3043
KEGG: cpf:CPF_0957 hypothetical protein.
       0.767
Ccel_3044
KEGG: cpf:CPF_0956 putative phage major capsid protein.
       0.759
Ccel_3045
PFAM: minor structural GP20 protein; KEGG: cno:NT01CX_2174 scaffold protein.
       0.731
Ccel_3036
KEGG: cpf:CPF_0964 hypothetical protein.
       0.672
Ccel_3037
Hypothetical protein.
       0.669
Ccel_3035
Phage-related protein-like protein; KEGG: dsy:DSY2176 hypothetical protein.
       0.667
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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