STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3063Hypothetical protein. (77 aa)    
Predicted Functional Partners:
Ccel_3061
Hypothetical protein.
       0.752
Ccel_3062
PFAM: DNA-directed DNA polymerase; KEGG: drm:Dred_1191 DNA-directed DNA polymerase.
       0.752
Ccel_3064
Hypothetical protein.
       0.651
Ccel_3059
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: drm:Dred_1193 DNA methylase N-4/N-6 domain-containing protein; Belongs to the N(4)/N(6)-methyltransferase family.
       0.643
Ccel_3060
PFAM: helicase domain protein; SMART: DEAD-like helicases; KEGG: drm:Dred_1192 helicase domain-containing protein.
       0.643
Ccel_3058
KEGG: bwe:BcerKBAB4_4105 hypothetical protein.
       0.634
Ccel_3057
PFAM: virulence-associated E family protein; KEGG: cbf:CLI_2429 putative virulence-associated protein E.
       0.594
Ccel_3065
KEGG: drm:Dred_1189 hypothetical protein.
       0.472
Ccel_3066
KEGG: drm:Dred_1188 hypothetical protein.
       0.452
Ccel_3067
KEGG: drm:Dred_1187 hypothetical protein.
       0.452
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.