STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3069Hypothetical protein. (95 aa)    
Predicted Functional Partners:
Ccel_3070
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2100 AbrB family transcriptional regulator.
       0.773
Ccel_3071
Hypothetical protein.
       0.773
Ccel_3072
Hypothetical protein.
       0.773
Ccel_3073
PFAM: NUMOD4 domain protein; KEGG: ser:SERP1512 HNH endonuclease family protein.
       0.773
Ccel_3068
KEGG: hit:NTHI1489 hypothetical protein.
       0.598
Ccel_3074
Hypothetical protein.
       0.568
Ccel_3066
KEGG: drm:Dred_1188 hypothetical protein.
       0.546
Ccel_3067
KEGG: drm:Dred_1187 hypothetical protein.
       0.546
Ccel_3065
KEGG: drm:Dred_1189 hypothetical protein.
       0.522
Ccel_3075
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bat:BAS3545 hypothetical protein.
       0.499
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.