Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3075Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: bat:BAS3545 hypothetical protein. (105 aa)    
Predicted Functional Partners:
Ccel_3074
Hypothetical protein.
       0.671
Ccel_3076
PFAM: helix-turn-helix domain protein; KEGG: spv:SPH_0073 repressor protein.
 
    
0.574
Ccel_3077
PFAM: protein of unknown function DUF955; KEGG: sha:SH1806 hypothetical protein.
  
  
 0.520
Ccel_3070
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cth:Cthe_2100 AbrB family transcriptional regulator.
     
 0.517
Ccel_3069
Hypothetical protein.
       0.499
Ccel_3071
Hypothetical protein.
       0.499
Ccel_3072
Hypothetical protein.
       0.499
Ccel_3073
PFAM: NUMOD4 domain protein; KEGG: ser:SERP1512 HNH endonuclease family protein.
       0.499
Ccel_3078
PFAM: Resolvase domain; Recombinase; KEGG: tex:Teth514_0698 recombinase.
  
    0.471
Ccel_3066
KEGG: drm:Dred_1188 hypothetical protein.
 
     0.449
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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