Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3082KEGG: cth:Cthe_2660 hypothetical protein. (179 aa)    
Predicted Functional Partners:
Ccel_3083
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein.
 
  
 0.985
Ccel_3084
PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4.
  
    0.763
Ccel_0021
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
  
     0.754
Ccel_3081
PFAM: Septum formation initiator; KEGG: cth:Cthe_2661 septum formation initiator.
 
    0.727
Ccel_1909
KEGG: cth:Cthe_0838 hypothetical protein.
  
     0.720
Ccel_0573
TIGRFAM: sporulation protein YqfD; PFAM: putative stage IV sporulation YqfD; KEGG: cth:Cthe_1072 putative stage IV sporulation YqfD.
  
   
 0.676
Ccel_0572
TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429; KEGG: cth:Cthe_1073 hypothetical protein.
  
   
 0.670
Ccel_2561
TIGRFAM: rod shape-determining protein MreD; KEGG: cth:Cthe_0090 hypothetical protein.
  
    0.612
Ccel_2063
sigma-E processing peptidase SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
  
 0.601
Ccel_3085
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.592
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.