Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_3084PFAM: RNA-binding S4 domain protein; KEGG: cth:Cthe_2658 RNA-binding S4. (79 aa)    
Predicted Functional Partners:
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
   0.870
Ccel_1964
PFAM: protein of unknown function DUF814; Fibronectin-binding A domain protein; KEGG: cth:Cthe_0581 fibronectin-binding A-like protein.
  
 
 
 0.860
hslO
Hsp33 protein; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress.
  
  
 0.850
rplQ
PFAM: ribosomal protein L17; KEGG: cth:Cthe_2933 50S ribosomal protein L17P.
   
 
 0.822
rpmB
PFAM: ribosomal protein L28; KEGG: cth:Cthe_1279 50S ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
   0.815
rpmH
PFAM: ribosomal protein L34; KEGG: cth:Cthe_2370 50S ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family.
   
   0.812
rplB
Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
    
 
 0.807
rpmA
PFAM: ribosomal protein L27; KEGG: cth:Cthe_0162 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
    
 
 0.805
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
   0.801
rpmG
PFAM: ribosomal protein L33; KEGG: cac:CAC3151 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
   0.798
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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