Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3124KEGG: aoe:Clos_1875 hypothetical protein. (377 aa)    
Predicted Functional Partners:
Ccel_3128
KEGG: aoe:Clos_1880 hypothetical protein.
       0.792
Ccel_3125
Hypothetical protein.
       0.773
Ccel_3126
PFAM: Peptidase M23; KEGG: oih:OB2491 hypothetical protein.
     
 0.770
Ccel_3127
KEGG: aoe:Clos_1879 hypothetical protein.
       0.762
Ccel_3129
Hypothetical protein.
       0.746
Ccel_3130
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cbe:Cbei_3375 transcriptional regulator, AbrB family.
       0.602
Ccel_3123
KEGG: hmo:HM1_0623 hypothetical protein.
       0.572
Ccel_0511
PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain-containing protein.
   
 
 0.554
Ccel_2478
PFAM: Forkhead-associated protein; KEGG: cbf:CLI_3569 FHA domain-containing protein.
   
 
 0.554
Ccel_3131
Hypothetical protein; KEGG: csc:Csac_2638 PKD domain-containing protein.
       0.538
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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