Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_3131Hypothetical protein; KEGG: csc:Csac_2638 PKD domain-containing protein. (1757 aa)    
Predicted Functional Partners:
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
 
     0.787
Ccel_3130
TIGRFAM: transcriptional regulator, AbrB family; PFAM: SpoVT/AbrB domain protein; KEGG: cbe:Cbei_3375 transcriptional regulator, AbrB family.
       0.686
Ccel_3127
KEGG: aoe:Clos_1879 hypothetical protein.
       0.556
Ccel_3128
KEGG: aoe:Clos_1880 hypothetical protein.
       0.556
Ccel_3129
Hypothetical protein.
       0.556
Ccel_3126
PFAM: Peptidase M23; KEGG: oih:OB2491 hypothetical protein.
       0.545
Ccel_3124
KEGG: aoe:Clos_1875 hypothetical protein.
       0.538
Ccel_3125
Hypothetical protein.
       0.538
Ccel_1261
KEGG: ote:Oter_3211 hypothetical protein.
  
     0.518
Ccel_3359
KEGG: bay:RBAM_013480 hypothetical protein.
  
     0.509
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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